Publication 業績


■ 2024

Aurantiochytrium mutant strains exhibiting different colony colors altered the contents of squalene
Yang T, Kubo S, Juntilia JD, Iwata Y, Tomita K, Hase Y, Oono Y, Araie H, Yoneda K, Maeda Y, Suzuki I
Bioscience, Biotechnology, and Biochemistry (2024)

Genome-Wide Mapping of Autonomously Replicating Sequences in the Marine Diatom Phaeodactylum tricornutum
Yun H, Yoneda K, Sugasawa T, Maeda Y, Suzuki I
Marine Biotechnology (2024)

Transcriptomic analysis reveals insights into the responses of Synechocystis sp. PCC 6803 to acidification during cultivation with ammonium salts as a nitrogen source
Kobayashi K, Yoneda K, Maeda Y, Suzuki I
Journal of Bioscience and Bioengineering (2024)

Expansion of omega-3 polyunsaturated fatty acid metabolism of the oleaginous diatom Fistulifera solaris by genetic engineering
Noraiza S, Kumakubo R, Yoshino T, Maeda Y, Murata S, Tanaka T
Journal of Bioscience and Bioengineering (2024)

Identification and Characterization of Yeast Species Isolated from Cornus kousa Fruits in Japan
Otani N, Kieu DMN, Hirokawa A, Kanki Y, Yun H, Maeda Y, Wenchao G, Takahashi Y, Sugasawa T
Fermentation, Vol.10 (2024)

Effect of organic carbon sources on growth, lipid production and fatty acid profile in mixotrophic culture of Scenedesmus dimorphus (Turpin) Kützing
Kenneth EO, James CO, Obioma UN, Yamada K, Suzuki I
The Microbe, Vol.3 (2024)

Isolation and characterization of an alkenone composition mutant in the haptophyte Tisochrysis lutea
Kubo S, Araie H, Hase Y, Satoh K, Oono Y, Iwata Y, Yoneda K, Maeda Y, Suzuki I
Algal Research, Vol.80 (2024)

Lipid droplets-vacuoles interaction promotes lipophagy in the oleaginous diatom Fistulifera solaris
Tanaka T, Moriya S, Nonoyama T, Maeda Y, Kaha M, Yoshino T, Matsumoto M, Bowler C
Algal Research, Vol.79 (2024)

The cadmium tolerance and bioaccumulation mechanism of Tetratostichococcus sp. P1: insight from transcriptomics analysis
Sahabudin E, Kubo S, Muhamad AMY, Nor'azizi O, Fazrena NMA, Suzuki K, Yoneda K, Maeda Y, Suzuki I, Hara H, Iwamoto K
Bioengineered, Vol.15 (2024)

Chromosome-scale genome assembly of an acidophilic microalga Tetratostichococcus sp. P1 isolated from a tropical peatland in Malaysia
Maeda Y, Hirakawa T, Suzuki S, Suhaimi N, Anuard NSS, Yoneda K, Shintani M, Suzuki K, Sunagawa N, Kawachi M, Suzuki I, Hara H
Microbiology Resource Announcements, e0081623 (2024)

Genetic modification of Aurantiochytrium sp. 18W-13a for enhancement of proteolytic activity by heterologous expression of extracellular proteases
Yoneda K, Man CH, Maeda Y, Suzuki I
Marine Biotechnology, doi: 10.1007/s10126-023-10280-x (2024)

Functional analysis of the carnosine synthase-like gene conserved in Monoraphidium braunii
Fakhri M, Yoneda K, Maeda Y, Suzuki I
Algal Research, Vol.78:103387 (2024)



■ 2023

Functional analysis of the putative centromere sequences of marine oleaginous diatom Fistulifera solaris
Maeda Y, Nakamura M, Watanabe K, Okamoto K, Tanaka T
Algal Research, Vol.74:103225 (2023)

Stramenopile-type lipid droplet protein functions as a lipid droplet scaffold protein in the marine diatom Phaeodactylum tricornutum
Yoneda K, Oishi R, Yoshida M, Matsuda Y, Suzuki I
Plant Cell Physiol, Vol.64(7):803-813 (2023)

Characterization of oil body-associated proteins obtained from oil bodies with different sizes in oleaginous diatom Fistulifera solaris
Kaha M, Noda M, Maeda Y, Kaneko Y, Kaneko Y, Yoshino T, Tanaka T
Journal of Bioscience and Bioengineering, Vol.135(5):359-368 (2023)

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Effect of agitation on growth and fatty acid composition of green microalgae Acutodesmus obliquus Q2-12E
Amzah NF, Mohamad SEB, Akhir FNM, Othman, Suzuki I, Maeda Y
Chemical Engineering Transactions, doi: 10.3303/CET23106206 (2023)

Sll1252 coordinates electron transport between plastoquinone and cytochrome b6/f complex in Synechocystis PCC 6803,
Balaga RR, Itoh F, Chauhan S, Mandal M, Krishna PS, Suzuki I, Prakash JSS
Genes, Vol.14(12):2151 (2023)

Two cyanobacterial response regulators with diguanylate cyclase activity, Rre2 and Rre8, participate in biofilm formation
Kobayashi A, Nakamura M, Tsujii M, Makino K, Nagayama T, Nakamura K, Nanatani K, Kera K, Furuuchi Y, Kayamori S, Furuta T, Suzuki I, Hayakawa Y, Tanudjaja E, Ishimaru Y, Uozumi N
Molecular Microbiology, Vol.119(5):599-611 (2023)

Mercury solubility and its modeling in an artificial natural gas at high pressures
Yamada J, Tsuji T, Shibuya T, Kobayashi A, Suzuki I
Fluid Phase Equilibria, Vol.568:113735 (2023)



■ 2022

Immobilization of a broad range of polypeptides on the frustule of the diatom Thalassiosira pseudonana
Shimakawa G, Katayama S, Tsuji Y, Yoneda K, Fukuda W, Fujiwara S, Matsuda Y
Applied and Environmental Microbiology, Vol.88(21):e0115322 (2022), PMID:35915286

Highly efficient genetic transformation methods for the marine oleaginous diatom Fistulifera solaris
Naser I, Yabu Y, Maeda Y, Tanaka T
Marine Biotechnology (2022), PMID: 36512290

Proteomic and lipidomic analyses of lipid droplets in Aurantiochytrium limacinum ATCC MYA-1381
Yoneda K, Ishibashi Y, Yoshida M, Watanabe MM, Ito M, Suzuki I
Algal Research, Vol.67:102844 (2022), Journal link

Evolution of a chimeric mitochondrial carbonic anhydrase through gene fusion in a haptophyte alga
Hirakawa Y, Hanawa Y, Yoneda K, Suzuki I.
FEBS Letters, Vol.596(23):3051-3059 (2022), PMID: 35997667

Isolation and characterization of acid-tolerant Stichococcus-like microalga (Tetratostichococcus sp. P1) from a tropical peatland in Malaysia
Sahabudin E, Lee J, Asada R, Marsid EA, Yusof N, Sabri NSA, Susanti H, Yuzir MAM, Akhir FNM, Othman N, Zakaria Z, Suzuki K, Iwamoto K, Suzuki I, Hara H
Journal of Applied Phycology, Vol.34:1881–1892 (2022), Journal link

Chromosome-scale genome assembly of the marine oleaginous diatom Fistulifera solaris
Maeda Y, Kobayashi R, Watanabe K, Yoshino T, Bowler C, Matsumoto M, Tanaka T
Marine Biotechnology, Vol.24: 788–800 (2022), PMID:35915286

A membrane-bound cAMP receptor protein, SyCRP1 mediates inorganic carbon response in Synechocystis sp. PCC 6803
Bantu L, Chauhan S, Srikumar A, Hirakawa Y, Suzuki I, Hagemann M, Prakash JSS.
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol.1865: 194803 (2022), PMID:35272049

Identification of extracellular proteases induced by nitrogen-limited conditions in the Thraustochytrids schizochytrium aggregatum ATCC 28209
Man CH, Shimura Y, Suzuki I.
Marine Biotechnology , Vol.24:243–254 (2022), PMID: 35262804



■ 2021

Rapid phosphate uptake via an ABC transporter induced by sulfate deficiency in Synechocystis sp. PCC 6803
Lee J, Iwata Y, Suzuki Y, Suzuki I.
Algal Research, Vol.60 (2021), Journal

Improvement and screening of astaxanthin producing mutants of newly isolated Coelastrum sp. using ethyl methane sulfonate induced mutagenesis technique
Tharek A, Yahya A, Salleh MM, Jamaluddin H, Yoshizaki S, Hara H, Iwamoto K, Suzuki I, Mohamad SE.
Biotechnology Reports, Vol.32 (2021), PMID: 34621628

Acutodesmus obliquus CN01 as new potential source of eicosatetraenoic acid: Enhancing omega-3 fatty acids production by Acutodesmus obliquus CN01 by medium optimization using Taguchi method
Othman FS, Ibrahim Z, Dolah R, Yoshizaki S, Homma K, Hara H, Suzuki I, Iwamoto K, Mohamad SE.
European Journal of Molecular & Clinical Medicine, Vol.08:4464-4473 (2021), Journal

Temperature Acclimation of the Picoalga Ostreococcus tauri Triggers Early Fatty-Acid Variations and Involves a Plastidial ω3-Desaturase
Degraeve-Guilbault C, Pankasem N, Gueirrero M, Lemoigne C, Domergue F, Kotajima T, Suzuki I, Joubès J, Corellou F.
Frontiers in Plant Science, Vol.12 (2021), PMID: 33815446

Development of a reversible regulatory system for gene expression in the cyanobacterium Synechocystis sp. PCC 6803 by quorum-sensing machinery from marine bacteria
Junaid M, Inaba Y, Otero A, Suzuki I.
Journal of Applied Phycology, Vol.33:1651-1662 (2021), Springer Link

The Enigmatic Snow Microorganism, Chionaster nivalis, Is Closely Related to Bartheletia paradoxa (Agaricomycotina, Basidiomycota)
Matsuzaki R, Takashima Y, Suzuki I, Kawachi M, Nozaki H, Nohara S, Degawa Y.
Microbes Environ, Vol.36(2) (2021), PMID:34135204

Production of hydroxy fatty acids and its effects on photosynthesis in the cyanobacterium Synechocystis sp. PCC 6803
Inada T, Machida S, Awai K, Suzuki I.
Algal Research, Vol.53 (2021), Journal



■ 2020

Association of Phosphatidylinositol-Specific Phospholipase C with Calcium-Induced Biomineralization in the Coccolithophore Emiliania huxleyi
Nam O, Suzuki I, Shiraiwa Y, Jin E.
Microorganisms, Vol.8(9)(2020), PMID:32927844

Plastidic Δ6 Fatty-Acid Desaturases with Distinctive Substrate Specificity Regulate the Pool of C18-PUFAs in the Ancestral Picoalga Ostreococcus tauri
Degraeve-Guilbault C, Gomez RE, Lemoigne C, Pankansem N, Morin S, Tuphile K, Joubès J, Jouhet J, Gronnier J, Suzuki I, Coulon D, Domergue F, Corellou F.
Plant Physiolgy, Vol.184(1):82-96 (2020), PMID:32669420

Sexual reproduction of the snow alga Chloromonas fukushimae (Volvocales, Chlorophyceae) induced using cultured materials
Matsuzaki R, Kawachi M, Nozaki H, Nohara S, Suzuki I.
PloS one, Vol.15 (2020), PMID:32845939



■ 2019

Genetic modification of the thraustochytrid Aurantiochytrium sp. 18W-13a for cellobiose utilization by secretory expression of β-glucosidase from Aspergillus aculeatus
Juntila Darryl Joy, Yoneda K, Suzuki I.
Algal Research, Vol.40 (2019), Abstract

A novel cell lysis system induced by phosphate deficiency in the cyanobacterium Synechocystis sp. PCC 6803
Asada R, Shiraiwa Y, Suzuki I.
Journal of Applied Phycology, Vol.31 : 1069–1076 (2019), Abstract

Whole gene transcriptomic analysis of PCB/biphenyl degrading Rhodococcus jostii RHA1
Shazwana S, Hara H, Araie H, Suzuki I et al.
The Journal of General and Applied Microbiology , Vol.65 : 173-179 (2019), PMID:30686798



■ 2018

Investigation of the Wet Extraction of Hydrocarbons from a Heterotrophic Microalga, Aurantiochytrium sp. 18W-13a, by Cell Disruption Using a High-pressure Homogenizer
Fukuda Y, Tsutsumi Y, Saito Y, Matsushita Y, Aoki H, Fukuda S, Suzuki I, Tani N.
Journal of the Japan Institute of Energy, Vol.97 : 353-361 (2018), Abstract

The effect of thiamine on the growth and fatty acid content of Aurantiochytrium sp
Tani N, Yoneda K, Suzuki I
Algal Research, Vol.36 : 57-66 (2018), Abstract

Overexpression of Tisochrysis lutea Akd1 identifies a key cold-induced alkenone desaturase enzyme
Endo H, Hanawa Y, Araie H, Suzuki I, Shiraiwa Y
Scientific Reports (2018),PMID:30046151

Cold-induced metabolic conversion of haptophyte di- to tri-unsaturated C37 alkenones used as palaeothermometer molecules
Kitamura E, Kotajima T, Sawada K, Suzuki I, Shiraiwa Y
Scientific Reports (2018),PMID:29396545

A novel cell lysis system induced by phosphate deficiency in the cyanobacterium Synechocystis sp. PCC 6803
Asada R, Shiraiwa Y, Suzuki I
Journal of Applied Phycology (2018)

Functional analysis of the plastidial desaturases from Ostreococcus tauri in Synechocystis sp. PCC 6803
Nattiwong P, Machida S, Fred D, Florence C, Suzuki I
Conference Paper

Characterization of cyanobacterial cells synthesizing 10-methyl stearic acid
Machida S, Suzuki I
Photosynthesis Research (2018)

Novel alkenone-producing strains of genus Isochrysis (Haptophyta) isolated from Canadian saline lakes show temperature sensitivity of alkenones and alkenoates
Araie H et al.
Organic Geochemistry (2018)

Homologous expression of lipid droplet protein-enhanced neutral lipid accumulation in the marine diatom Phaeodactylum tricornutum
Yoneda K, Yoshida M, Suzuki I, Watanabe M
Journal of Applied Phycology (2018), Springer Link



■ 2017

Changes in the accumulation of alkenones and lipids under nitrogen limitation and its relation to other energy storage metabolites in the haptophyte alga Emiliania huxleyi CCMP 2090
Bakku RK, Araie H, Hanawa Y, Shiraiwa Y, Suzuki I.
Journal of Applied Phycology (2017)

Identification of extracellular proteins from Aurantiochytrium sp. 18W-13a
Juntila DJ, Yoneda K, Suzuki I.
Journal of Applied Phycology (2017)

Corrigendum to ‘Nutrient recycle from defatted microalgae (Aurantiochytrium) with hydrothermal treatment for microalgae cultivation’
Aida et al.
Bioresource Technology (2017)

Development of engineered sensor perceiving gaseous toluene signal in the cyanobacterium Synechocystis sp. PCC 6803
Inaba Y, Morioka R, Junaid M, Shiraiwa Y, Suzuki I.
Journal of Applied Phycology (2017)

Expression of Genes for a Flavin Adenine Dinucleotide-Binding Oxidoreductase and a Methyltransferase from Mycobacterium chlorophenolicum Is Necessary for Biosynthesis of 10-Methyl Stearic Acid from Oleic Acid in Escherichia coli
Machida S, Bakku RK, Suzuki I.
Frontirs in Microbiology (2017) PMID: 29109716

全有機体炭素計（TOC計）とフーリエ変換赤外分光光度計（FT-IR）を用いた 微細藻類の細胞非破壊系での簡便な貯蔵脂質の生産性評価 －海洋ハプト藻が合成する長鎖不飽和ケトン（アルケノン）のセミ定量技術の開発－ .
塙優・白岩善博
島津アプリケーションノート No. 43, LAAN-C-XX044, (2017).
(English ver.)
Determination of Storage Lipid Contents by Total Organic Carbon (TOC) Analyzer and Fourier Transform Infrared Spectrophotometer (FT-IR) in Non-Destructive Microalgal Cells – A New Method for the Semi-Quantitative Analysis of Long-Chain Ketones (Alkenones) Produced by Marine Haptophyte Algae –
Yutaka Hanawa & Yoshihiro shiraiwa
Application Note 43, Shimadu, LAAN-C-XX-E026, (2017).



■ 2016

Identification of a major lipid droplet protein in a marine diatom Phaeodactylum tricornutum .
Yoneda K, Yoshida M, Suzuki I , Watanabe MM.
Plant and Cell Physiology , 57(2):397-406 (2016). PMID:26738549

Construction of a cyanobacterium synthesizing cyclopropane fatty acids.
Machida S , Shiraiwa Y , Suzuki I .
Biochimica et Biophysica Acta , 1861(9 Pt A):980-987 (2016). PMID: 27263419

Rapid detection and quantification of haptophyte alkenones by Fourier transform infrared spectroscopy (FTIR)
Pelusi A, Hanawa Y, Araie H, Suzuki I, Giordano M, Shiraiwa Y.
Algal Research 19:48-56 (2016)



■ 2015

Light intensity modulation by coccoliths of Emiliania huxleyi as a micro-photo-regulator.
Mizukawa Y, Miyashita Y, Satoh M, Shiraiwa Y and Iwasaka M
Scientific Reports, PMID:26323524

Proteomic analysis of lipid body from the alkenone-producing marine haptophyte alga, Tisochrysis lutea.
Shi Q, Araie H, Bakku RK, Fukao Y, Rakwal R, Suzuki I and Shiraiwa Y
Proteomics, PMID:25914246

Quantitative analysis of carbon flow into photosynthetic products functioning as carbon storage in the marine coccolithophore, Emiliania huxleyi.
Tsuji Y, Yamazaki M, Suzuki I, Shiraiwa Y
Marine Biotechnology, PMID:25874681

n-Nonacosadienes from the marine haptophytes Emiliania huxleyi and Gephyrocapsa oceanica.
Nakamura H, Sawada K, Araie H, Suzuki I, Shiraiwa Y
Phytochemistry, PMID:25595675

Physicochemical properties of divinyl chlorophylls a, a’ and divinyl pheophytin a compared with those of monovinyl derivatives.
Komatsu H, Fujinuma D, Akutsu S, Fukayama D, Sorimachi Y, Kato Y, Kuroiwa Y, Watanabe T, Miyashita H, Iwamoto K, Shiraiwa Y, Ohnishi-Kameyama M, Ono H, Koike H, Sato M, Kawachi M, Kobayashi M
Photomedicine and Photobiology, 36: 59-69 (2015)

Comparative analysis of kdp and ktr mutants reveals distinct roles of the potassium transporters in the model cyanobacterium Synechocystis sp. PCC 6803.
Nanatani K, Shijuku T, Takano Y, Zulkifli L, Yamazaki T, Tominaga A, Souma S, Onai K, Morishita M, Ishiura M, Hagemann M, Suzuki I, Maruyama H, Arai F, Uozumi N.
Journal of Bacteriology, 197: 676-687 (2015), PMID:25313394



■ 2014

Functional screening of a novel Δ15 fatty acid desaturase from the coccolithophorid Emiliania huxleyi.
Kotajima T, Shiraiwa Y, Suzuki I
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids, 1842: 1451-1458 (2014), PMID:25046625

Difference in physiological responses of growth, photosynthesis and calcification of the coccolithophore Emiliania huxleyi to acidification by acid and CO2.
Fukuda S, Suzuki Y, Shiraiwa Y
Photosynthesis Research, 121: 299-309 (2014), PMID:24500605

Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy.
Fukuda S, Iwamoto K, Atsumi M, Yokoyama A, Nakayama T, Ishida K, Inouye I, Shiraiwa Y
Journal of Plant Research, 127: 79-89 (2014), PMID:24346654

Alteration of cyanobacterial sugar and amino acid metabolism by overexpression hik8, encoding a KaiC-associated histidine kinase.
Osanai T, Shirai T, Iijima H, Kuwahara A, Suzuki I, Kondo A, Hirai MY
Environmental Microbiology, in press (2014), PMID:25403325

Optimization of isopropanol production by engineered cyanobacteria with a synthetic metabolic pathway.
Hirokawa Y, Suzuki I, Hanai T
Journal of Bioscience and Bioengineering, in press (2014), PMID:25454065



■ 2013

A novel transcriptional regulator, Sll1130, negatively regulates heat-responsive genes in Synechocystis sp. PCC6803.
Krishna PS, Rani BR, Mohan MK, Suzuki I, Shivaji S, Prakash JS
Biochemical Journal, 449: 751-760 (2013), PMID:23088579

Long chain alkenes, alkenones and alkenoates produced by the haptophyte alga Chrysotila lamellosa CCMP1307 isolated from a salt marsh.
Nakamura H, Sawada K, Araie H, Suzuki I, Shiraiwa Y
Organic Geochemistry, 66: 90-97 (2013), Abstract

Functional analysis of the N-terminal region of an essential histidine kinase, Hik2, in the cyanobacterium Synechocystis sp. PCC 6803.
Kotajima T, Shiraiwa Y, Suzuki I
FEMS Microbiology Letters, 351: 88-94 (2013), PMID:24283389

Biofuels as a sustainable energy source: an update of the applications of proteomics in bioenergy crops and algae.
Ndimba BK, Ndimba RJ, Johnson TS, Waditee-Sirisattha R, Baba M, Sirisattha S, Shiraiwa Y, Agrawal GK, Rakwal R.
Journal of Proteomics, 93: 234-44 (2013), PMID:23792822

Pan genome of the phytoplankton Emiliania underpins its global distribution.
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Allen AE, Bidle K, Borodovsky M, Bowler C, Brownlee C, Mark Cock J, Elias M, Gladyshev VN, Groth M, Guda C, Hadaegh A, Debora Iglesias-Rodriguez M, Jenkins J, Jones BM, Lawson T, Leese F, Lindquist E, Lobanov A, Lomsadze A, Malik SB, Marsh ME, Mackinder L, Mock T, Mueller-Roeber B, Pagarete A, Parker M, Probert I, Quesneville H, Raines C, Rensing SA, Riano-Pachon DM, Richier S, Rokitta S, Shiraiwa Y, Soanes DM, van der Giezen M, Wahlund TM, Williams B, Wilson W, Wolfe G, Wurch LL, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV
Nature, 499: 209-213 (2013), PMID:23760476

Codon usage of Botryococcus braunii (Trebouxiophyceae, Chlorophyta): implications for genetic engineering applications.
Ioki M, Baba M, Nakajima N, Shiraiwa Y, Watanabe MM
Phycologia, 52: 352-356 (2013), Abstract

Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68oC enhances generation of n-alkane-rich biofuels after pyrolysis.
Yamane K, Matsuyama S, Igarashi K, Utsumi M, Shiraiwa Y, Kuwabara T
Applied and Environmental Microbiology, 79: 924-930 (2013), PMID:23183975

Changes in alkaline band formation and calcification of corticated charophyte Chara globularis.
Kawahata C, Yamamuro M, Shiraiwa Y
SpringerPlus, 2: 8 (2013), PMID:23543879

Detection of divinyl chlorophyll a' and divinyl pheophytin a as minor key components in a marine picoplankton Prochlorococcus sp. RCC315.
Fujinuma D, Akutsu S, Komatsu H, Watanabe T, Miyashita H, Iwamoto K, Shiraiwa Y, Islam MR, Koike H, Kawachi M, Kobayashi M
Photomedicine and Photobiology, 34: 47-52 (2013), (Proceedings)



■ 2012

CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
Arun PV, Bakku RK, Subhashini M, Singh P, Prabhu NP, Suzuki I, Prakash JS
PLoS One, e49425 (2012), PMID:23185330

Changes in alkenone and alkenoate distributions during acclimatization to salinity change in Isochrysis galbana: Implication for alkenone-based paleosalinity and paleothermometry.
Ono M, Sawada K, Shiraiwa Y, Kubota M
Geochemical Journal, 46: 235-247 (2012), Abstract

Enhancement of coccolithophorid blooms in the Bering Sea by recent environmental changes.
Harada N, Sato M, Oguri K, Hagino K, Okazaki Y, Katsuki K, Tsuji Y, Shin K-H, Tadai O, Saitoh S, Narita H, Konno S, Jordan RW, Shiraiwa Y, Grebmeier J
Global Biogeochemical Cycles, 26: GB2036 (2012), Abstract

Characterization of the subdomains in the amino-terminal region of histidine kinase Hik33 in the cyanobacterium Synechocystis sp. PCC 6803.
Shimura Y, Shiraiwa Y, Suzuki I
Plant and Cell Physiology, 53: 1255-1266 (2012), PMID:22555814

Enzymological evidence for the function of a plastid-located pyruvate carboxylase in the Haptophyte alga Emiliania huxleyi: a novel pathway for the production of C4 compounds.
Tsuji Y, Suzuki I, Shiraiwa Y
Plant and Cell Physiology, 53: 1043-1052 (2012), PMID:22492231

Optimization of light for growth, photosynthesis, and hydrocarbon production by the colonial microalga Botryococcus braunii BOT-22.
Sakamoto K, Baba M, Suzuki I, Watanabe MM, Shiraiwa Y
Bioresource Technology, 110: 474-479 (2012), PMID:22334002

Modes of hydrocarbon oil biosynthesis revealed by comparative gene expression analysis for race A and race B strains of Botryococcus braunii.
Ioki M, Baba M, Bidadi H, Suzuki I, Shiraiwa Y, Watanabe MM, Nakajima N
Bioresource Technology, 109: 271-276 (2012), PMID:22257857

Transcriptome analysis of an oil-rich race B strain of Botryococcus braunii (BOT-70) by de novo assembly of 5'-end sequences of full-length cDNA clones.
Ioki M, Baba M, Nakajima N, Shiraiwa Y
Bioresource Technology, 109: 277-281 (2012), PMID:22217731

Transcriptome analysis of an oil-rich race A strain of Botryococcus braunii (BOT-88-2) by de novo assembly of pyrosequencing cDNA reads.
Baba M, Ioki M, Nakajima N, Shiraiwa Y, Watanabe MM
Bioresource Technology, 109: 282-286 (2012), PMID:22137751

Transcriptome analysis of an oil-rich race B strain of Botryococcus braunii (BOT-22) by de novo assembly of pyrosequencing cDNA reads.
Ioki M, Baba M, Nakajima N, Shiraiwa Y, Watanabe MM
Bioresource Technology, 109: 292-296 (2012), PMID:21963247

Wavelength specificity of growth, photosynthesis, and hydrocarbon production in the oil-producing green alga Botryococcus braunii.
Baba M, Kikuta F, Suzuki I, Watanabe MM, Shiraiwa Y
Bioresource Technology, 109: 266-270 (2012), PMID:21683581



■ 2011

Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants.
Hackenberg C, Kern R, Huge J, Stal LJ, Tsuji Y, Kopka J, Shiraiwa Y, Bauwe H, Hagemann M
Plant Cell, 23: 2978-2990 (2011), PMID:21828292

Proteomic analysis of high-CO2-inducible extracellular proteins in the unicellular green alga, Chlamydomonas reinhardtii.
Baba M, Suzuki I, Shiraiwa Y
Plant and Cell Physiolgy, 52: 1302-1314 (2011) PMID:21680606

Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta).
Araie Y, Sakamoto K, Suzuki I, Shiraiwa Y
Plant and Cell Physiology, 52: 1204-1210 (2011) PMID:21632656

Molecular characterization of adenosine 5'-monophosphate deaminase -The key enzyme responsible for the umami taste of nori (Porphyra yezoensis Ueda, Rhodophyta).
Minami S, Sato M, Shiraiwa Y, Iwamoto K
Marine Biotechnology, 13: 1140-1147 (2011), PMID:21519809

Functions of a hemolysin-like protein in the cyanobacterium Synechocystis sp. PCC 6803.
Sakiyama T, Araie Y, Suzuki I, Shiraiwa Y
Archives of Microbiology, 193: 565-571 (2011) PMID:21475984

Regulation of the expression of H43/Fea1 by multi-signals.
Baba M, Hanawa Y, Suzuki I, Shiraiwa Y
Photosynthesis Research, 109: 169-177 (2011), PMID:21243526

Eukaryotic-like Ser/Thr protein kinases SpkC/F/K are involved in phosphorylation of GroES in the cyanobacterium Synechocystis.
Zorina A, Stepanchenko N, Novikova GV, Sinetova M, Panichkin VB, Moshkov IE, Zinchenko VV, Shestakov SV, Suzuki I, Murata N, Los DA
DNA Research, 18: 137-151 (2011) PMID:21551175



■ 2010

Mg isotopes and Mg/Ca values of coccoliths from cultured specimens of the species Emiliania huxleyi and Gephyrocapsa oceanica.
Ra K, Kitagawa H, Shiraiwa Y
Marine Micropaleontology, 77: 119-124 (2010) Science Direct:S0377839810000836

Mg isotopes in chlorophyll-a and coccoliths of cultured coccolithophores (Emiliania huxleyi) by MC-ICP-MS.
Ra K, Kitagawa H, Shiraiwa Y
Marine Chemistry, 122: 130-137 (2010) Science Direct:S0304420310000873

Compensatory response of the unicellular-calcifying alga Emiliania huxleyi (Coccolithophoridales, Haptophyta) to ocean acidification.
Fukuda S, Suzuki I, Hama T, Shiraiwa Y
Journal of Oceanography, 67: 17-25 (2010) SpringerLink:cm5137172g648055

Effect of coccolith polysaccharides isolated from the coccolithophorid, Emiliania huxleyi, on calcite crystal formation in vitro CaCO3 Crystallization.
Kayano K, Saruwatari K, Kogure T, Shiraiwa Y
Marine Biotechnology, 13: 83-92 (2010) PMID:20336339

Identification of components associated with thermal acclimation of photosystem II in Synechocystis sp. PCC 6803.
Rowland JG, Pang X, Suzuki I, Murata N, Simon WJ, Slabas AR
PLoS ONE, 5: e10511 (2010) PMID:20463904

Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.
Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I, Masuda T, Mochimaru M, Takaichi S, Awai K, Sekine M, Horikawa H, Yashiro I, Omata S, Takarada H, Katano Y, Kosugi H, Tanikawa S, Ohmori K, Sato N, Ikeuchi M, Fujita N, Ohmori M
DNA Research, 17: 85-103 (2010) PMID:20203057



■ 2009

Physiological regulation of coccolith polysaccharide production by phosphate availability in the coccolithophorid Emiliania huxleyi.
Kayano K, Shiraiwa Y
Plant and Cell Physiology, 50: 1522-1531 (2009) PMID:19587028

An RNA helicase, CrhR, regulates the low-temperature-inducible expression of three genes for molecular chaperones in Synechocystis sp. PCC 6803.
Prakash JS, Krishna PS, Sirisha K, Kanesaki Y, Suzuki I, Shivaji S, Murata N
Microbiology, 156: 442-451 (2009) PMID:19926653

DNA supercoiling regulates the stress-inducible expression of genes in the cyanobacterium Synechocystis.
Prakash JS, Sinetova M, Zorina A, Kupriyanova E, Suzuki I, Murata N, Los DA
Molecular BioSystems, 5: 1904-1912 (2009) PMID:19763333

A Synechocystis homolog of SipA protein, Ssl3451, enhances the activity of the histidine kinase Hik33.
Sakayori T, Shiraiwa Y, Suzuki I
Plant and Cell Physiology, 50: 1439-1448 (2009) PMID:19542180

Function of the N-terminal region of the phosphate-sensing histidine kinase, SphS, in Synechocystis sp. PCC 6803.
Kimura S, Shiraiwa Y, Suzuki I
Microbiology, 155: 2256-2264 (2009) PMID:19389760

Cold stress stimulates intracellular calcification by the coccolithophore, Emiliania huxleyi (Haptophyceae) under phosphate-deficient conditions.
Satoh M, Iwamoto K, Suzuki I, Shiraiwa Y
Marine Biotechnology, 11: 327-333 (2009) PMID:18830665

Cloning and characterization of a Chlamydomonas reinhardtii cDNA arylalkylamine N-acetyltransferase and its use in the genetic engineering of melatonin content in the Micro-Tom tomato.
Okazaki M, Higuchi K, Hanawa Y, Shiraiwa Y, Ezura H
Journal of Pineal Research, 46: 373-382 (2009) PMID:19552760

Photosynthetic carbon assimilation in the coccolithophorid Emiliania huxleyi (Haptophyta): evidence for the contribution of β-carboxylation enzymes.
Tsuji Y, Suzuki I, Shiraiwa Y
Plant and Cell Physiology, 50: 318-329 (2009) PMID:19109302