筑波大学植物代謝生理学研究室
(白岩・鈴木研)

〒305-8572
茨城県つくば市天王台 1-1-1
筑波大学大学院
生命環境科学研究科
生物科学専攻
植物代謝生理学研究室

Tel&Fax (029)853-4908

CRESTのページ

Poster ポスター (A0)

Pamphlet パンフレット (A4)

藻類リサーチユニット

卒研生・大学院生・研究マインド研究生(生物学類)を募集しています. まずはどなたか教員にご連絡後, ラボ見学に来てみてください.

Publication 業績


■ 2015

Light intensity modulation by coccoliths of Emiliania huxleyi as a micro-photo-regulator.
Mizukawa Y, Miyashita Y, Satoh M, Shiraiwa Y and Iwasaka M
Scientific Reports, PMID:26323524

Proteomic analysis of lipid body from the alkenone-producing marine haptophyte alga, Tisochrysis lutea.
Shi Q, Araie H, Bakku RK, Fukao Y, Rakwal R, Suzuki I and Shiraiwa Y
Proteomics, PMID:25914246

Quantitative analysis of carbon flow into photosynthetic products functioning as carbon storage in the marine coccolithophore, Emiliania huxleyi.
Tsuji Y, Yamazaki M, Suzuki I, Shiraiwa Y
Marine Biotechnology, PMID:25874681

n-Nonacosadienes from the marine haptophytes Emiliania huxleyi and Gephyrocapsa oceanica.
Nakamura H, Sawada K, Araie H, Suzuki I, Shiraiwa Y
Phytochemistry, PMID:25595675

Physicochemical properties of divinyl chlorophylls a, a’ and divinyl pheophytin a compared with those of monovinyl derivatives.
Komatsu H, Fujinuma D, Akutsu S, Fukayama D, Sorimachi Y, Kato Y, Kuroiwa Y, Watanabe T, Miyashita H, Iwamoto K, Shiraiwa Y, Ohnishi-Kameyama M, Ono H, Koike H, Sato M, Kawachi M, Kobayashi M
Photomedicine and Photobiology, 36: 59-69 (2015)

Comparative analysis of kdp and ktr mutants reveals distinct roles of the potassium transporters in the model cyanobacterium Synechocystis sp. PCC 6803.
Nanatani K, Shijuku T, Takano Y, Zulkifli L, Yamazaki T, Tominaga A, Souma S, Onai K, Morishita M, Ishiura M, Hagemann M, Suzuki I, Maruyama H, Arai F, Uozumi N.
Journal of Bacteriology, 197: 676-687 (2015), PMID:25313394



■ 2014

Functional screening of a novel Δ15 fatty acid desaturase from the coccolithophorid Emiliania huxleyi.
Kotajima T, Shiraiwa Y, Suzuki I
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids, 1842: 1451-1458 (2014), PMID:25046625

Difference in physiological responses of growth, photosynthesis and calcification of the coccolithophore Emiliania huxleyi to acidification by acid and CO2.
Fukuda S, Suzuki Y, Shiraiwa Y
Photosynthesis Research, 121: 299-309 (2014), PMID:24500605

Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy.
Fukuda S, Iwamoto K, Atsumi M, Yokoyama A, Nakayama T, Ishida K, Inouye I, Shiraiwa Y
Journal of Plant Research, 127: 79-89 (2014), PMID:24346654

Alteration of cyanobacterial sugar and amino acid metabolism by overexpression hik8, encoding a KaiC-associated histidine kinase.
Osanai T, Shirai T, Iijima H, Kuwahara A, Suzuki I, Kondo A, Hirai MY
Environmental Microbiology, in press (2014), PMID:25403325

Optimization of isopropanol production by engineered cyanobacteria with a synthetic metabolic pathway.
Hirokawa Y, Suzuki I, Hanai T
Journal of Bioscience and Bioengineering, in press (2014), PMID:25454065



■ 2013

A novel transcriptional regulator, Sll1130, negatively regulates heat-responsive genes in Synechocystis sp. PCC6803.
Krishna PS, Rani BR, Mohan MK, Suzuki I, Shivaji S, Prakash JS
Biochemical Journal, 449: 751-760 (2013), PMID:23088579

Long chain alkenes, alkenones and alkenoates produced by the haptophyte alga Chrysotila lamellosa CCMP1307 isolated from a salt marsh.
Nakamura H, Sawada K, Araie H, Suzuki I, Shiraiwa Y
Organic Geochemistry, 66: 90-97 (2013), Abstract

Functional analysis of the N-terminal region of an essential histidine kinase, Hik2, in the cyanobacterium Synechocystis sp. PCC 6803.
Kotajima T, Shiraiwa Y, Suzuki I
FEMS Microbiology Letters, 351: 88-94 (2013), PMID:24283389

Biofuels as a sustainable energy source: an update of the applications of proteomics in bioenergy crops and algae.
Ndimba BK, Ndimba RJ, Johnson TS, Waditee-Sirisattha R, Baba M, Sirisattha S, Shiraiwa Y, Agrawal GK, Rakwal R.
Journal of Proteomics, 93: 234-44 (2013), PMID:23792822

Pan genome of the phytoplankton Emiliania underpins its global distribution.
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Allen AE, Bidle K, Borodovsky M, Bowler C, Brownlee C, Mark Cock J, Elias M, Gladyshev VN, Groth M, Guda C, Hadaegh A, Debora Iglesias-Rodriguez M, Jenkins J, Jones BM, Lawson T, Leese F, Lindquist E, Lobanov A, Lomsadze A, Malik SB, Marsh ME, Mackinder L, Mock T, Mueller-Roeber B, Pagarete A, Parker M, Probert I, Quesneville H, Raines C, Rensing SA, Riano-Pachon DM, Richier S, Rokitta S, Shiraiwa Y, Soanes DM, van der Giezen M, Wahlund TM, Williams B, Wilson W, Wolfe G, Wurch LL, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV
Nature, 499: 209-213 (2013), PMID:23760476

Codon usage of Botryococcus braunii (Trebouxiophyceae, Chlorophyta): implications for genetic engineering applications.
Ioki M, Baba M, Nakajima N, Shiraiwa Y, Watanabe MM
Phycologia, 52: 352-356 (2013), Abstract

Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68oC enhances generation of n-alkane-rich biofuels after pyrolysis.
Yamane K, Matsuyama S, Igarashi K, Utsumi M, Shiraiwa Y, Kuwabara T
Applied and Environmental Microbiology, 79: 924-930 (2013), PMID:23183975

Changes in alkaline band formation and calcification of corticated charophyte Chara globularis.
Kawahata C, Yamamuro M, Shiraiwa Y
SpringerPlus, 2: 8 (2013), PMID:23543879

Detection of divinyl chlorophyll a' and divinyl pheophytin a as minor key components in a marine picoplankton Prochlorococcus sp. RCC315.
Fujinuma D, Akutsu S, Komatsu H, Watanabe T, Miyashita H, Iwamoto K, Shiraiwa Y, Islam MR, Koike H, Kawachi M, Kobayashi M
Photomedicine and Photobiology, 34: 47-52 (2013), (Proceedings)



■ 2012

CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
Arun PV, Bakku RK, Subhashini M, Singh P, Prabhu NP, Suzuki I, Prakash JS
PLoS One, e49425 (2012), PMID:23185330

Changes in alkenone and alkenoate distributions during acclimatization to salinity change in Isochrysis galbana: Implication for alkenone-based paleosalinity and paleothermometry.
Ono M, Sawada K, Shiraiwa Y, Kubota M
Geochemical Journal, 46: 235-247 (2012), Abstract

Enhancement of coccolithophorid blooms in the Bering Sea by recent environmental changes.
Harada N, Sato M, Oguri K, Hagino K, Okazaki Y, Katsuki K, Tsuji Y, Shin K-H, Tadai O, Saitoh S, Narita H, Konno S, Jordan RW, Shiraiwa Y, Grebmeier J
Global Biogeochemical Cycles, 26: GB2036 (2012), Abstract

Characterization of the subdomains in the amino-terminal region of histidine kinase Hik33 in the cyanobacterium Synechocystis sp. PCC 6803.
Shimura Y, Shiraiwa Y, Suzuki I
Plant and Cell Physiology, 53: 1255-1266 (2012), PMID:22555814

Enzymological evidence for the function of a plastid-located pyruvate carboxylase in the Haptophyte alga Emiliania huxleyi: a novel pathway for the production of C4 compounds.
Tsuji Y, Suzuki I, Shiraiwa Y
Plant and Cell Physiology, 53: 1043-1052 (2012), PMID:22492231

Optimization of light for growth, photosynthesis, and hydrocarbon production by the colonial microalga Botryococcus braunii BOT-22.
Sakamoto K, Baba M, Suzuki I, Watanabe MM, Shiraiwa Y
Bioresource Technology, 110: 474-479 (2012), PMID:22334002

Modes of hydrocarbon oil biosynthesis revealed by comparative gene expression analysis for race A and race B strains of Botryococcus braunii.
Ioki M, Baba M, Bidadi H, Suzuki I, Shiraiwa Y, Watanabe MM, Nakajima N
Bioresource Technology, 109: 271-276 (2012), PMID:22257857

Transcriptome analysis of an oil-rich race B strain of Botryococcus braunii (BOT-70) by de novo assembly of 5'-end sequences of full-length cDNA clones.
Ioki M, Baba M, Nakajima N, Shiraiwa Y
Bioresource Technology, 109: 277-281 (2012), PMID:22217731

Transcriptome analysis of an oil-rich race A strain of Botryococcus braunii (BOT-88-2) by de novo assembly of pyrosequencing cDNA reads.
Baba M, Ioki M, Nakajima N, Shiraiwa Y, Watanabe MM
Bioresource Technology, 109: 282-286 (2012), PMID:22137751

Transcriptome analysis of an oil-rich race B strain of Botryococcus braunii (BOT-22) by de novo assembly of pyrosequencing cDNA reads.
Ioki M, Baba M, Nakajima N, Shiraiwa Y, Watanabe MM
Bioresource Technology, 109: 292-296 (2012), PMID:21963247

Wavelength specificity of growth, photosynthesis, and hydrocarbon production in the oil-producing green alga Botryococcus braunii.
Baba M, Kikuta F, Suzuki I, Watanabe MM, Shiraiwa Y
Bioresource Technology, 109: 266-270 (2012), PMID:21683581



■ 2011

Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants.
Hackenberg C, Kern R, Huge J, Stal LJ, Tsuji Y, Kopka J, Shiraiwa Y, Bauwe H, Hagemann M
Plant Cell, 23: 2978-2990 (2011), PMID:21828292

Proteomic analysis of high-CO2-inducible extracellular proteins in the unicellular green alga, Chlamydomonas reinhardtii.
Baba M, Suzuki I, Shiraiwa Y
Plant and Cell Physiolgy, 52: 1302-1314 (2011) PMID:21680606

Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta).
Araie Y, Sakamoto K, Suzuki I, Shiraiwa Y
Plant and Cell Physiology, 52: 1204-1210 (2011) PMID:21632656

Molecular characterization of adenosine 5'-monophosphate deaminase -The key enzyme responsible for the umami taste of nori (Porphyra yezoensis Ueda, Rhodophyta).
Minami S, Sato M, Shiraiwa Y, Iwamoto K
Marine Biotechnology, 13: 1140-1147 (2011), PMID:21519809

Functions of a hemolysin-like protein in the cyanobacterium Synechocystis sp. PCC 6803.
Sakiyama T, Araie Y, Suzuki I, Shiraiwa Y
Archives of Microbiology, 193: 565-571 (2011) PMID:21475984

Regulation of the expression of H43/Fea1 by multi-signals.
Baba M, Hanawa Y, Suzuki I, Shiraiwa Y
Photosynthesis Research, 109: 169-177 (2011), PMID:21243526

Eukaryotic-like Ser/Thr protein kinases SpkC/F/K are involved in phosphorylation of GroES in the cyanobacterium Synechocystis.
Zorina A, Stepanchenko N, Novikova GV, Sinetova M, Panichkin VB, Moshkov IE, Zinchenko VV, Shestakov SV, Suzuki I, Murata N, Los DA
DNA Research, 18: 137-151 (2011) PMID:21551175



■ 2010

Mg isotopes and Mg/Ca values of coccoliths from cultured specimens of the species Emiliania huxleyi and Gephyrocapsa oceanica.
Ra K, Kitagawa H, Shiraiwa Y
Marine Micropaleontology, 77: 119-124 (2010) Science Direct:S0377839810000836

Mg isotopes in chlorophyll-a and coccoliths of cultured coccolithophores (Emiliania huxleyi) by MC-ICP-MS.
Ra K, Kitagawa H, Shiraiwa Y
Marine Chemistry, 122: 130-137 (2010) Science Direct:S0304420310000873

Compensatory response of the unicellular-calcifying alga Emiliania huxleyi (Coccolithophoridales, Haptophyta) to ocean acidification.
Fukuda S, Suzuki I, Hama T, Shiraiwa Y
Journal of Oceanography, 67: 17-25 (2010) SpringerLink:cm5137172g648055

Effect of coccolith polysaccharides isolated from the coccolithophorid, Emiliania huxleyi, on calcite crystal formation in vitro CaCO3 Crystallization.
Kayano K, Saruwatari K, Kogure T, Shiraiwa Y
Marine Biotechnology, 13: 83-92 (2010) PMID:20336339

Identification of components associated with thermal acclimation of photosystem II in Synechocystis sp. PCC 6803.
Rowland JG, Pang X, Suzuki I, Murata N, Simon WJ, Slabas AR
PLoS ONE, 5: e10511 (2010) PMID:20463904

Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.
Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I, Masuda T, Mochimaru M, Takaichi S, Awai K, Sekine M, Horikawa H, Yashiro I, Omata S, Takarada H, Katano Y, Kosugi H, Tanikawa S, Ohmori K, Sato N, Ikeuchi M, Fujita N, Ohmori M
DNA Research, 17: 85-103 (2010) PMID:20203057



■ 2009

Physiological regulation of coccolith polysaccharide production by phosphate availability in the coccolithophorid Emiliania huxleyi.
Kayano K, Shiraiwa Y
Plant and Cell Physiology, 50: 1522-1531 (2009) PMID:19587028

An RNA helicase, CrhR, regulates the low-temperature-inducible expression of three genes for molecular chaperones in Synechocystis sp. PCC 6803.
Prakash JS, Krishna PS, Sirisha K, Kanesaki Y, Suzuki I, Shivaji S, Murata N
Microbiology, 156: 442-451 (2009) PMID:19926653

DNA supercoiling regulates the stress-inducible expression of genes in the cyanobacterium Synechocystis.
Prakash JS, Sinetova M, Zorina A, Kupriyanova E, Suzuki I, Murata N, Los DA
Molecular BioSystems, 5: 1904-1912 (2009) PMID:19763333

A Synechocystis homolog of SipA protein, Ssl3451, enhances the activity of the histidine kinase Hik33.
Sakayori T, Shiraiwa Y, Suzuki I
Plant and Cell Physiology, 50: 1439-1448 (2009) PMID:19542180

Function of the N-terminal region of the phosphate-sensing histidine kinase, SphS, in Synechocystis sp. PCC 6803.
Kimura S, Shiraiwa Y, Suzuki I
Microbiology, 155: 2256-2264 (2009) PMID:19389760

Cold stress stimulates intracellular calcification by the coccolithophore, Emiliania huxleyi (Haptophyceae) under phosphate-deficient conditions.
Satoh M, Iwamoto K, Suzuki I, Shiraiwa Y
Marine Biotechnology, 11: 327-333 (2009) PMID:18830665

Cloning and characterization of a Chlamydomonas reinhardtii cDNA arylalkylamine N-acetyltransferase and its use in the genetic engineering of melatonin content in the Micro-Tom tomato.
Okazaki M, Higuchi K, Hanawa Y, Shiraiwa Y, Ezura H
Journal of Pineal Research, 46: 373-382 (2009) PMID:19552760

Photosynthetic carbon assimilation in the coccolithophorid Emiliania huxleyi (Haptophyta): evidence for the contribution of β-carboxylation enzymes.
Tsuji Y, Suzuki I, Shiraiwa Y
Plant and Cell Physiology, 50: 318-329 (2009) PMID:19109302